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(VF, 18.09.2009)
Publications
Koua D, Cerutti L, Falquet L, Sigrist CJ, Theiler G, Hulo N, Dunand C.
" PeroxiBase: a database with new tools for peroxidase family classification.", Nucleic Acids Research, 37 : D261-6 (2009).
Wurm Y, Uva P, Ricci F, Wang J, Jemielity S, Iseli C, Falquet L, Keller L.
" Fourmidable: a database for ant genomics.", BMC Genomics, 10(1): 5 (2009).
Proux E, Studer R A, Moretti S, Robinson-Rechavi M.
" Selectome: a database of positive selection.", Nucleic Acids Research, 37: D404-7(2009).
Martin O, Valsesia A, Telenti A, Xenarios I, Stevenson B J.
"AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.", Bioinformatics, 25(5): 662-3 (2009).
Garg A, Mohanram K, Di Cara A, De Micheli G, Xenarios I.
" Modeling stochastictiy and robustness in gene regulatory networks.", Bioinformatics, 25(12): i101-9 (2009).
Ortiz M, Guex N, Patin E, Martin O, Xenarios I, Ciuffi A, Quintana-Murci L, Telenti A.
"Evolutionary Trajectories of Primate Genes Involved in HIV Pathogenesis.", Molecular Biology and Evolution, (Epub ahead of print)
Gattiker A, Hermida L, Liechti R, Xenarios I, Collin O, Rougemont J, Primig M.
"MIMAS3.0 is a Multiomics Information Management and Annotation System.", BMC Bioinformatics, 10: 151 (2009).
Vuilleumier S, Chistoserdova L, Lee MC, Bringel F, Lajus A, Zhou Y, Gourion B, Barbe V, Chang J, Cruveiller S, Dossat C, Gillett W, Gruffaz C, Haugen E, Hourcade E, Levy R, Mangenot S, Muller E, Nadalig T, Pagni M, Penny C, Peyraud R, Robinson DG, Roche D, Rouy Z, Saenampechek C, Salvignol G, Vallenet D, Wu Z, Marx CJ, Vorholt JA, Olson MV, Kaul R, Weissenbach J, Médigue C, Lidstrom ME.
" Methylobacterium Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources.", PloS ONE, 4(5): e5584 (2009).
Calderon-Copete SP, Wigger G, Wunderlin C, Schmidheini T, Frey J, Quail MA, Falquet L.
"The Mycoplasma conjunctivae genome sequencing, annotation and analysis.", BMC Bioinformatics, 10 (Suppl 6): S7 (2009).
Schüpbach T, Zoete V, Tsakam-Sotché B, Michielin O.
" Fourier transform convolution integrals applied to generalized Born molecular volume..", Journal of computational chemistry, (Epub ahead of print).
Gattiker A, Dessimoz C, Schneider A, Xenarios I, Pagni M, Rougemont J.
"The Microbe browser for comparative genomics.", Nucleic Acids Research, 37: W296-9 (2009).
Joosten R, Salzemann J, Bloch V, Stockinger H, Berglund A-Ch, Blanchet Ch, Bongcam-Rudloff E, Combet Ch, Da Costa A, Deleage G, Diarena M, Fabbretti R, Fettahi G, Flegel V, Gisel A, Kasam V, Kervinen T, Korpelainen E, Mattila K, Pagni M, Reichstadt M, Breton V, Tickle I, Vriend G.
"PDB_REDO: automated re-refinement of X-ray structure models in the PDB.", Journal of Applied Crystallography, 42: 376-384 (2009).